Genetic Audit of Australian Barramundi (Lates calcarifer) - 2013

This dataset contains electronic appendices including raw data and summary genetic statistics associated with the final report for FRDC project No. 2010/521. Report Title: Vulnerability of an iconic Australian finfish (barramundi – Lates calcarifer) and aligned industries to climate change across tropical Australia Report Authors: Dean R. Jerry, Carolyn Smith-Keune, Lauren Hodgson, Igor Pirozzi, A. Guy Carton, Kate S. Hutson, Alexander K. Brazenor, Alejandro Trujillo Gonazlez, Stephen Gamble, Geoff Collins and Jeremy VanDerWal The appendices include: E1: a table of microsatellite allele definitions used in the project E2: a table of the raw data consisting of 16 locus microsatellite genotypes E3: a matrix of the pairwise Fst values for 48 barramundi collections across Australia E4: a summary table of Fishers' Exact Tests for differentiation between 48 barramundi collections E5: a summary table of the allele frequencies for 16 microsatellite loci within 21 identified subpopulations of barramundi across Australia. The raw data given in E2 is currently an example only and the full dataset will be made available later at the time of journal article publication. All data and associated summary genetic statistics were generated by Carolyn Smith-Keune with the assistance of Shannon Loughnon (Flinders University) and are from barramundi tissue samples spread across 48 collections including 43 locations within Northern Australia from the Pilbara region in Western Australia to the Mary River in Queensland. The raw data consists of individual fish genotypes for 16 microsatellite DNA markers genotyped at James Cook University.

    Data Record Details
    Data record related to this publication Genetic Audit of Australian Barramundi (Lates calcarifer) - 2013
    Data Publication title Genetic Audit of Australian Barramundi (Lates calcarifer) - 2013
  • Description

    This dataset contains electronic appendices including raw data and summary genetic statistics associated with the final report for FRDC project No. 2010/521. Report Title: Vulnerability of an iconic Australian finfish (barramundi – Lates calcarifer) and aligned industries to climate change across tropical Australia Report Authors: Dean R. Jerry, Carolyn Smith-Keune, Lauren Hodgson, Igor Pirozzi, A. Guy Carton, Kate S. Hutson, Alexander K. Brazenor, Alejandro Trujillo Gonazlez, Stephen Gamble, Geoff Collins and Jeremy VanDerWal The appendices include: E1: a table of microsatellite allele definitions used in the project E2: a table of the raw data consisting of 16 locus microsatellite genotypes E3: a matrix of the pairwise Fst values for 48 barramundi collections across Australia E4: a summary table of Fishers' Exact Tests for differentiation between 48 barramundi collections E5: a summary table of the allele frequencies for 16 microsatellite loci within 21 identified subpopulations of barramundi across Australia. The raw data given in E2 is currently an example only and the full dataset will be made available later at the time of journal article publication. All data and associated summary genetic statistics were generated by Carolyn Smith-Keune with the assistance of Shannon Loughnon (Flinders University) and are from barramundi tissue samples spread across 48 collections including 43 locations within Northern Australia from the Pilbara region in Western Australia to the Mary River in Queensland. The raw data consists of individual fish genotypes for 16 microsatellite DNA markers genotyped at James Cook University.

  • Other Descriptors
  • Data type dataset
  • Keywords
    • Barramundi
    • Genetics
    • Fisheries management
  • Funding source
  • Research grant(s)/Scheme name(s)
    • 19168 - (James Cook University Research Activities) Vulnerability of an iconic Australian finfish (barramundi, Lates calcarifer) and related industries to altered climate across tropical Australia
  • Research themes
    Tropical Ecosystems, Conservation and Climate Change
    Industries and Economies in the Tropics
    FoR Codes (*)
    • 060411 - Population, Ecological and Evolutionary Genetics
    SEO Codes
    • 830204 - Wild Caught Fin Fish (excl. Tuna)
    Specify spatial or temporal setting of the data
    Temporal (time) coverage
  • Start Date
  • End Date
  • Time Period
    Spatial (location) coverage
  • Locations
    Data Locations

    Type Location Notes
    Physical Location Centre for Sustainable Tropical Fisheries and Aquaculture School of Marine & Tropical Biology James Cook University Townsville QLD 4811 Australia Complete dataset is stored in the secure_data section of the TDH HPC archive - FRDC2010_521_ElectronicAppendicesE1toE5.xlsx
    Attachment FRDC2010_521_ElectronicAppendicesE1toE5_PUBLIC.xlsx
    The Data Manager is: Dean Jerry
    College or Centre
    Access conditions
  • Alternative access conditions
  • Data record size 832 KB
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    Citation Smith-Keune, Carolyn; Jerry, Dean (2013): Genetic Audit of Australian Barramundi (Lates calcarifer) - 2013. James Cook University.