My career so far has consisted of applying genetic and genomic tools to address research questions with a strong applied aquaculture industry focus. I have more than 10 years’ experience working in quantitative and population genetics of marine wildlife and commercially important species (including pearl oysters, shrimp, damselfish, lobster and barramundi), throughout Australia, Indonesia, West Papua and French Polynesia.

Research Disciplines

• Fisheries sciences (3005)
• Genetics (3105)

These are the most recent publications associated with this author. To see a detailed profile of all publications stored at JCU, visit ResearchOnline@JCU. Hover over Altmetrics badges to see social impact.

Journal Articles

• Guppy J, Jones D, Kjeldsen S, Le Port A, Khatkar M, Wade N, Sellars M, Raadsma H, Jerry D and Zenger K (2020) Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs. BMC Genomics, 21, Article: 541, DOI:10.1186/s12864-020-06960-w.
• Jones D, Nguyen H, Khatkar M, Simma D, Jerry D, Raadsma H, van der Steen H, Prochaska J and Zenger K (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529, Article: 735673, DOI:10.1016/j.aquaculture.2020.735673.
• Nayfa M, Jones D, Benzie J, Jerry D and Zenger K (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11, Article: 567969, DOI:10.3389/fgene.2020.567969.
• Zenger K, Khatkar M, Jones D, Khalilisamani N, Jerry D and Raadsma H (2019) Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters. Frontiers in Genetics, 9, Article: 693, DOI:10.3389/fgene.2018.00693.
• Guppy J, Jones D, Jerry D, Wade N, Raadsma H, Huerlimann R and Zenger K (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9, Article: 282, DOI:10.3389/fgene.2018.00282.
• Goncalves P, Jones D, Thompson E, Parker L, Ross P and Raftos D (2017) Transcriptomic profiling of adaptive responses to ocean acidification. Molecular Ecology, 26 (21), pp. 5974-5988, DOI:10.1111/mec.14333.
• Goncalves P, Jones D, Thompson E, Parker L, Ross P and Raftos D (2017) Transcriptomic profiling of adaptive responses to ocean acidification. Molecular Ecology, 26 (21), pp. 5974-5988, DOI:10.1111/mec.14333.
• Jones D, Jerry D, Khatkar M, Raadsma H, van der Steen H, Prochaska J, Fôret S and Zenger K (2017) A comparative integrated gene-based linkage and locus ordering by linkage disequilibrium map for the Pacific white shrimp, Litopenaeus vannamei. Scientific Reports, 7, Article: 10360, DOI:10.1038/s41598-017-10515-7.

Conference Papers

• Lapico A, Sankupellay M, Cianciullo L, Myers T, Konovalov D, Jerry D, Toole P, Jones D and Zenger K (2019) Using image processing to automatically measure pearl oyster size for selective breeding. Proceedings of the International Conference on Digital Image Computing. In: DICTA 2019: International Conference on Digital Image Computing: Techniques and Applications, 2-4 December 2019, Perth, WA, Australia
• Jones D, Toole P, Khatkar M, Raadsma H, Jerry D and Zenger K (2017) Developing a genomic selection breeding program for complex pearl colour traits within the silver-lipped pearl oyster. Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. In: 22nd AAABG Conference 2017, 2-5 July 2017, Townsville, QLD, Australia
• Jones D, Zenger K, Khatkar M, Raadsma H, van der Steen H, Prochaska J, Fôret S and Jerry D (2017) Development of a low density commercial genotyping array for the white legged shrimp, Litopenaeus vannamei. Proceedings of the Conference of the Association for the Advancement of Animal Breeding and Genetics. In: 22nd AAABG Conference 2017, 2-5 July 2017, Townsville, QLD, Australia
• Khatkar M, Jones D, Toole P, Raadsma H, Jerry D and Zenger K (2017) Reconstruction of unknown donor genome from chimeric pearl sac tissue and host genotypes in pinctada maxima. Proceedings of the Association for the Advancement of Animal Breeding and Genetics. In: 22nd AAABG Conference 2017, 2-5 July 2017, Townsville, QLD, Australia

More

ResearchOnline@JCU stores 21+ research outputs authored by Dr Dave Jones from 2008 onwards.

Current and recent Research Funding to JCU is shown by funding source and project.

Advisory Accreditation: I can be on your Advisory Panel as a Primary or Secondary Advisor.

These Higher Degree Research projects are either current or by students who have completed their studies within the past 5 years at JCU. Linked titles show theses available within ResearchOnline@JCU.

Current

• Development of Dense Genomic Resources for the Black Tiger Prawn to Unravel the Genetic Architecture of Complex Traits in the Black Tiger Prawn (PhD , Secondary Advisor)

Completed

• Domestication in aquaculture fishes - Elucidating the genetic consequences in Nile tilapia (Oreochromis niloticus) (2020, PhD , Secondary Advisor)

These are the most recent metadata records associated with this researcher. To see a detailed description of all dataset records, visit Research Data Australia.

• Jones, D. (2020) Family and population genotypic data from the commercial Infinium ShrimpLD-24 BeadChip. James Cook University
• Nayfa, M. (2020) SNP DArT Data- Generations 9-11 of the Abbassa Strain of Nile tilapia, Egypt. James Cook University
• Nayfa, M. (2020) In Silico DArt Data- Generations 9-11 of the Abbassa Strain of Nile Tilapia, Egypt. James Cook University

The map shows research collaborations by institution from the past 7 years.
Note: Map points are indicative of the countries or states that institutions are associated with.