JCU > Research Portfolio > Prof Marcus Sheaves

About

Marcus Sheaves is a Distinguished Professor in the College of Science and Engineering, where he is Director of Special Projects. Marcus also leads JCU’s Estuary and Coastal Wetland Ecology Research Group, and, JCU’s Marine Data Technology Hub.

Marcus has researched ecosystem and fisheries ecology of tropical coastal systems, estuaries, coastal wetlands and mangroves since the early 1990s. His research has focussed particularly on nursery ground utilisation and values, the role of connected habitat mosaics in ecosystem functioning, functional mapping of marine habitats, the use of developing technology (e.g., artificial intelligence) in environmental problem-solving, and critical thinking in environmental decision-making. He has published widely with over 75 peer reviewed publications over the last 5 years. Marcus leads a number of substantial research projects within Australia and across the Asia-Pacific region. He has extensive collaborations with research and management organisations both within Australia and internationally.

Teaching

MB3270: Coastal, Estuarine and Mangrove Ecosystems (Level 3; TSV)
MB5270: Coastal, Estuarine and Mangrove Ecosystems (Level 5; TSV)
MB5610: Fishing Gear and Technologies (Level 5; TSV)

Interests

Research

The ecology of estuaries and coastal wetland ecosystems, in particular in: nursery ground function, animal habitat relationships, the role of ecosystem mosaics and connectivity
Ecosystem repair and rejuvenation, contributions to food security and the effects of climate change
Fisheries, food web, seascape and spatial ecology

Research Disciplines

Socio-Economic Objectives

Honours

Awards

2006 - Best Paper of the Year; 'Coral Reefs' - Journal of the International Society of Reef Studies

Fellowships

2009 - Australian Academy of Sciences Study Fellowship

Other

2012 - Primary Postgraduate Advisor of the Year, James Cook University

Publications

These are the most recent publications associated with this author. To see a detailed profile of all publications stored at JCU, visit ResearchOnline@JCU. Hover over Altmetrics badges to see social impact.

Journal Articles

Bradley M, Sheaves M and Waltham N (2023) Urban-industrial seascapes can be abundant and dynamic fish habitat. Frontiers in Marine Science, 9.
Barnett A, Fitzpatrick R, Bradley M, Miller I, Sheaves M, Chin A, Smith B, Diedrich A, Yick J, Lubitz N, Crook K, Mattone C, Bennett M, Wojtach L and Abrantes K (in press) Scientific response to a cluster of shark bites. People and Nature,
Borland H, Gilby B, Henderson C, Connolly R, Gorissen B, Ortodossi N, Rummell A, Pittman S, Sheaves M and Olds A (2022) Dredging transforms the seafloor and enhances functional diversity in urban seascapes. Science of the Total Environment, 831.
Borland H, Gilby B, Henderson C, Connolly R, Gorissen B, Ortodossi N, Rummell A, Nagelkerken I, Pittman S, Sheaves M and Olds A (in press) Seafloor Terrain Shapes the Three-dimensional Nursery Value of Mangrove and Seagrass Habitats. Ecosystems,
Borland H, Gilby B, Henderson C, Connolly R, Gorissen B, Ortodossi N, Rummell A, Pittman S, Sheaves M and Olds A (2022) Dredging fundamentally reshapes the ecological significance of 3D terrain features for fish in estuarine seascapes. Landscape Ecology, 37. pp. 1385-1400
Bradley M, Nagelkerken I, Baker R, Travers M and Sheaves M (2022) Local Environmental Context Structures Animal-Habitat Associations Across Biogeographic Regions. Ecosystems, 25. pp. 237-251
Crook K, Sheaves M and Barnett A (2022) Species-specific foraging behaviors define the functional roles of sympatric stingrays. Limnology and Oceanography, 67 (1). pp. 219-230
Mattone C, Bradley M, Barnett A, Konovalov D and Sheaves M (2022) Environmental conditions constrain nursery habitat value in Australian sub-tropical estuaries. Marine Environmental Research, 175.
Murray N, Worthington T, Bunting P, Duce S, Hagger V, Lovelock C, Lucas R, Saunders M, Sheaves M, Spalding M, Waltham N and Lyons M (2022) High-resolution mapping of losses and gains of Earth's tidal wetlands. Science, 376. pp. 744-749
Saleh A, Sheaves M and Rahimi Azghadi M (in press) Computer vision and deep learning for fish classification in underwater habitats: A survey. Fish and Fisheries,
Walker S, Sheaves M and Waltham N (in press) Barriers to Using UAVs in Conservation and Environmental Management: A Systematic Review. Environmental Management,
Waltham N, Bradley M, Wilson S, Kane K, Langham O and Sheaves M (2022) Remotely operated vehicle reveals fish orientate to the substrate underneath marina floating pontoons. Estuarine, Coastal and Shelf Science, 280.

More: ResearchOnline@JCU stores 195+ research outputs authored by Prof Marcus Sheaves from 1992 onwards.

Current Funding

Current and recent Research Funding to JCU is shown by funding source and project.

Great Barrier Reef Foundation - Reef Trust Partnership

Integrated reef fish monitoring - Nursery Seascapes

Indicative Funding: $102,345 over 2 years (administered by Australian Institute of Marine Science)
Summary: A 2 year monitoring program to understand the abundance, diversity, and assemblage composition of Great Barrier Reef Fishes. Within this program, JCU Marine Data Tech will be working with project partners conducting bi-annual surveys of reef fishes in nursery seascapes in the central GBR. Data will be collected using stereo Remote Underwater Video Systems and processed using Artificial Intelligence computing.
Investigators: Michael Bradley, Dmitry Konovalov and Marcus Sheaves (College of Science & Engineering)
Keywords: Reef Fish; Seascape; Great Barrier Reef; Fisheries; Monitoring; Nursery grounds

Ecological Society of Australia - Holsworth Wildlife Research Endowment

How are stingray communities distributed across tropical intertidal sandflats and which environmental factors influence their habitat use?

Indicative Funding: $11,665 over 3 years
Summary: Stingrays are important meso-predators in coastal habitats around the world that impact biotic communities and structure physical environments. However, broad spatial assessments of ray habitat use are lacking, resulting in poor understanding of their ecological value and how to implement effective management strategies. The project aims to assess how the composition of stingray communities varies across tropical intertidal sandflats and which environmental variables (including prey availability) influence their distribution patterns. This goal is divided into five research objectives whose outcomes will improve habitat use models for intertidal rays and investigate important aspects of ray foraging and movement behaviours.
Investigators: Jaelen Myers, Marcus Sheaves, Carlo Mattone, Michael Bradley and Adam Barnett (College of Science & Engineering)
Keywords: Predator-prey; Habitat use; stingray; Intertidal sandflat; Animal distribution

Australian Research Council - Linkage - Infrastructure (L-IEF)

Australian Acoustic Observatory: A Network to Monitor Biodiversity

Indicative Funding: $927,000 over 8 years (administered by QUT)
Summary: Acoustic sensing is transforming environmental science by recording vocal species 24 x 7, providing data of unparalleled spatial and temporal resolution for ecosystem monitoring and research. This is particularly relevant to Australia's fragile and mega-diverse environment and Australia has leading research expertise in this emerging field. The proposed observatory will be the world's largest terrestrial acoustic sensor network comprising 450 listening stations deployed across Australia. Funds will purchase autonomous sound recorders and online storage and processing hardware. Data will be freely available to all online, enabling new science in understanding ecosystems, long-term environmental change, data visualisation and acoustic science.
Investigators: Paul Roe, David Watson, Richard Fuller, Stuart Parsons, Tomasc Bednarz, Margot Brereton, Lin Schwarzkopf, Dale Nimmo, Berndt Janse van Rensburg, Martine Maron, Marcus Sheaves, Paul McDonald and Gary Luck (Queensland University of Technology, Charles Sturt University, The University of Queensland, College of Science & Engineering and The University of New England)
Keywords: Monitoring; Frogs; acoustic; Birds

Australian Marine Conservation Society - Contract Research

Spatial evaluation of megafauna distribution and gill net fisheries in Queensland.

Indicative Funding: $8,000
Summary: The aims of the project is to assess how the distribution and important ecological regions for various species of megafauna in the GBR, overlap with current commercial gillnet activities. This will be done creating spatial maps that will also be used to highlight areas of data deficiency.
Investigators: Marcus Sheaves and Carlo Mattone (College of Science & Engineering)
Keywords: Gillnet; Megafauna; spatial evaluation

Cairns Airport Pty Ltd - Contract Research

Food Web Assessment of the Cairns Airport Waterways

Indicative Funding: $48,350 over 1 year
Summary: This project aims to assess the food web organisation of the waterways adjacent to the Cairns Airport, to identify the species most likely to be impacted by per- and polyfluoroalkyl substances (PFAS). PFAS are toxic persistent pollutants that accumulate up the food chains and can be transferred to people that consume fish caught in contaminated waterways. The study will construct a model of food web functioning based on stable isotope analysis (producers, invertebrates and fish). By describing the food web, it will be possible to identify where the risk of PFAS exposure to people (through fish consumption) is present.
Investigators: Katya dos Santos Abrantes, Marcus Sheaves and Adam Barnett (College of Science & Engineering)
Keywords: Food webs; Estuaries; Stable isotope analysis

Australian Society for Fish Biology - Michael Hall Student Innovation Award

Integrating spatio-temporal distributions of estuary whiprays (Hemitrygon fluviorum) with natural behaviours to better understand fine-scale habitat use in estuary environments

Indicative Funding: $1,000 over 1 year
Summary: The aim of this project is to evaluate spatio-temporal distributions and behaviours of estuary stingrays to contribute new knowledge on fine-scale habitat use. Interpreting these data together will show how individuals distribute over available habitat but also which behaviours drive these patterns. Additionally, prolonged observations of natural behaviours will highlight the foraging strategies of estuary stingrays and if there are foraging facilitation interactions between rays and other fish. This component will be valuable for highlighting how data on animal behaviour can be adapted into species management.
Investigators: Jaelen Myers, Marcus Sheaves, Carlo Mattone, Michael Bradley and Joni Fitzsimmons (College of Science & Engineering and Macquarie University)
Keywords: Predator-prey; Habitat use; Stingrays; Intertidal sandflat; Animal distribution

Royal Zoological Society of New South Wales - Ethel Mary Read Research Grant

Acoustic tagging of stingrays

Indicative Funding: $3,000 over 1 year
Summary: My aim is to assess how the dispersal and habitat selection of juvenile rays to better estimate their ecological roles and improve conservation strategies for species in tropical estuaries. Juvenile rays of two species (Mangrove whipray (Urogymnus granulatus) and Australian whipray (Himantura australis)) will be tagged and monitored over a period of 6-12 months with a passive acoustic receiver array in Deluge Inlet, QLD. This project will detail the seasonal residency, dispersal ranges, and core habitat ranges of each species over short (diel) and long-term (monthly, seasonally) temporal scales.
Investigators: Jaelen Myers, Marcus Sheaves, Carlo Mattone and Michael Bradley (College of Science & Engineering)
Keywords: Movement ecology; Habitat use; Stingray; Intertidal sandflat; Animal distribution; Drone

Morris Family Foundation - Student Research Grant

Distributions and behaviours of stingrays

Indicative Funding: $3,000 over 1 year
Summary: Stingrays are abundant intermediate predators in shallow coastal waters that impact biotic communities and structure physical environments. However, assessments of ray communities and their habitat use are sparse, resulting in poor understanding of their ecological value and management. For this project, I will evaluate ray populations in diverse intertidal habitats around Orpheus Island and examine how spatio-temporal factors influence community composition, distribution and behaviours. This goal is divided into research objectives with outcomes that will improve our ability to identify valuable areas for rays and understand how behaviours are linked to habitat choice, functional roles, and ecological impacts.
Investigators: Jaelen Myers, Marcus Sheaves, Carlo Mattone and Michael Bradley (College of Science & Engineering)
Keywords: Movement Ecology; Habitat Use; Stingray; Intertidal Sandflat; Animal Distribution; Drone

WV Scott Charitable Trust - Research Grant

Addressing urgent welfare concerns for Blackspotted Croaker (Protonibea diacanthus) populations in Queensland

Indicative Funding: $50,000 over 3 years
Summary: The Blackspotted Croaker (also known as black jewfish) is targeted by commercial, recreational, indigenous and charter fishing groups. Since 2017 there has been a rapid increase in targeted commercial fishing effort for Blackspotteed Croaker in Queensland. Given the high value of Blackspotteed Croaker, their vulnerability as aggregating species and the absence of a stock assessment to inform how many populations need to be managed, updated biological/ecological information (Including stock structure) are needed for assessment and protection of Blackspotted Croaker stock(s) in Queensland. The study aims at identifying stock structure and connectivity (including aggregation time) in order to improve management of th species across Queensland.
Investigators: Marcus Sheaves, Adam Barnett, Carlo Mattone and Michael Bradley (College of Science & Engineering)
Keywords: Population Genetic Structure; Fisheries Management; Epinephelus nigritus (Serranidae); Blackspotted Croaker

The World Wide Fund for Nature, Australia - Contract Research

JCU Spawning Potential app development

Indicative Funding: $37,500 (administered by World Wide Fund for Nature Australia)
Summary: The central biological measure of success for the ?Community- Based Sustainable Development in Solomon Island and PNG Coastal Communities? projects are trends in the Spawning Potential Ratio (SPR) of key target species. This Project seeks to refine the Spawning Potential Survey (SPS) App (JCU FISH) to include spatial reporting tools that can be utilised by survey participants to monitor spatial and temporal trends in SPR. This project extends from an earlier ?proof of concept? project funded by the WWF Ocean Practice where the potential for automatic identification and measurement of target species from a single image was realised.
Investigators: Marcus Sheaves, Ickjai Lee, Jason Holdsworth and Michael Bradley (College of Science & Engineering)
Keywords: Reef Fish; Pacific Islands; Fisheries; App; Catch data; Monitoring

Food & Agriculture Organization of the United Nations - Contract Research

Fish sensory analysis and consumers' preference study.

Indicative Funding: $336,124 over 2 years
Summary: This project seeks to carry out a fish sensory analysis and consumer acceptability study in order to determine fish taste preferences and purchasing criteria of UAE residents, and to provide guidance for developing a consumer-appropriate fish breeding and production programme.
Investigators: Marcus Sheaves in collaboration with Paul McShane, David Milne and Constantinos Stathopoulos (College of Science & Engineering, Global Marine Resource Management Pty Ltd and United Arab Emirates University)
Keywords: Seafood; Sensory evaluation; Consumer preference; Consumer Behaviour; Aquaculture

Fisheries Research & Development Corporation - Annual Competitive Round

Application of a machine learning approach for effective stock management of abalone

Indicative Funding: $115,649 over 2 years
Summary: Determining the number and size distribution of abalone present at various stages of production is critical information for effective stock management. Currently the Australian abalone aquaculture industry spends in the order of $25,000 per annum, per farm, gathering this information by hand. However, the resulting data is of mediocre quality, is limited in its scope, and collecting the data causes stress to the animals which can compromise growth and survival. Automated counting and measuring of abalone will increase farm efficiency and productivity in the short term and, in the longer term, will provide an advanced platform for further R&D improvements. Artificial intelligence and machine learning has now matured to a point that accurately counting and measuring abalone is possible using this approach. This project would involve the development, training and validation of a machine learning model to identify, segment and measure quantitative abalone traits in production systems, and render the product data to be accessible and applicable for farmers.
Investigators: Jan Strugnell, Marcus Sheaves, Carlo Mattone, Ickjai Lee, Joanne Lee, Jason Holdsworth and Art (Hemmaphan) Suwanwiwat (College of Science & Engineering)
Keywords: Abalone (Haliotidae); Machine Learning

Supervision

Advisory Accreditation: I can be on your Advisory Panel as a Primary or Secondary Advisor.

These Higher Degree Research projects are either current or by students who have completed their studies within the past 5 years at JCU. Linked titles show theses available within ResearchOnline@JCU.

Current

Natural tropical oysters as ecosystem engineers; implications for enhancing ecosystem goods and services (PhD , Secondary Advisor/AM)
Saltmarsh Connectivity in Tropical Seascapes: An Eco-hydrological Perspective (PhD , Secondary Advisor/AM)
Habitat Use, Movement Patterns and Trophic Ecology of Sharks and rays within Mangrove Forests (PhD , Advisor Mentor)
Habitat Context and Trophic Structure in Tropical Intertidal Systems (PhD , Primary Advisor/AM/Adv)
How are stingray communities distributed across tropical intertidal sandflats and which environmental factors influence their habit use? (PhD , Primary Advisor/AM/Adv)
Investigating the challenges and needs of small island developing states to develop improved processes for the monitoring of fouling marine invasive species (PhD , Primary Advisor/AM/Adv)
Ecological and Environmental Characteristics of Nurseries of Fisheries Species, and Implications for the Management of Critical Fish Habitats (PhD , Primary Advisor/AM/Adv)
Assessing the potential for recreational fishing to contribute to conservation of coastal marine species and habitats (PhD , Secondary Advisor)
Mitigating and Adapting to Change in the Tropics: Livelihood Sustainability of North Queensland Commercial Fishers (PhD , Secondary Advisor)
Understanding the influence of propagule transport in the dispersal and connectivity of marine macrophytes (PhD , Secondary Advisor/AM)
Developing High-Performance Deep Learning Tools for Marine Habitat Monitoring (PhD , Secondary Advisor/AM)
Enabling accessible technology for more effective conservations of coastal systems (PhD , Secondary Advisor/AM)
Drivers of Migration in sharks and rays (PhD , Secondary Advisor/AM)
Mangrove restoration trajectories: trends & lessons from Guyana (PhD , Secondary Advisor/AM)
Drivers of Migration and Habitat use of Marine Predators: Forecasting how Anthropogenic Disturbances might Destabilize Migration and Habitat use Patterns (PhD , Secondary Advisor/AM)

Completed

The effects of a changing marine environment on the bioeroding sponge Cliona orientalis (2018, PhD , Secondary Advisor/AM)
Context dependence in the habitat relationships of coastal and marine fishes (2019, PhD , Primary Advisor/AM/Adv)
Dissolved oxygen as a constraint for the structure of mangrove fish assemblages and their patterns of mangrove utilisation: a comparison between natural and disturbed mangrove ecosystems through the Austra (2019, PhD , Primary Advisor/AM/Adv)
Novel approach for the classification of habitats in tropical estuaries exposed to urban and industrial development (2019, PhD , Secondary Advisor/AM)
Measuring productivity of Australian tropical estuaries using standing stock analysis (2020, Masters , Primary Advisor/AM/Adv)
A transdisciplinary evaluation of forest retention policies and practices in the Australian context (2020, PhD , Advisor Mentor)
Integrated assessment of ecosystem connectivity and functioning: coastal forest avifauna of northeast Australia (2018, PhD , Primary Advisor)
Viruses in coral reef sponges (2020, PhD , Secondary Advisor/AM)
Understanding the social dimensions of small-scale tilapia aquaculture in rural Solomon Islands (2021, PhD , Advisor Mentor)
The role of herbivores as ecosystem engineers in Great Barrier Reef seagrass meadows (2021, PhD , Advisor Mentor)
Biodiversity beyond species census: assessing organisms' traits and functional attributes using computer vision (2021, PhD , Primary Advisor/AM/Adv)
Multi-scale patterns in movement and space use of sharks on inshore reefs (2021, PhD , Secondary Advisor)
Population structure and connectivity of demersal sharks in isolation (2021, PhD , Secondary Advisor/AM)
Assessing the functional roles of rays in coastal sandflats (2020, PhD , Secondary Advisor/AM)

Data

These are the most recent metadata records associated with this researcher. To see a detailed description of all dataset records, visit Research Data Australia.

Saleh, A. (2020) DeepFish: A realistic fish-habitat dataset to evaluate algorithms for underwater visual analysis. James Cook University
Dubuc, A. (2019) Dataset: fish assemblages and environmental parameters in Bourake. James Cook University
Bradley, M. (2019) Data from: Context is more important than habitat type in determining use by juvenile fish. James Cook University

Collaboration

The map shows research collaborations by institution from the past 7 years.
Note: Map points are indicative of the countries or states that institutions are associated with.