- MB2060: Marine Ecology and Environmental Assessment (Level 2; TSV)
- MB2070: Evolution and Biogeography of Marine Organisms (Level 2; TSV)
- MB3190: Coral Reef Ecology (Level 3; TSV)
- MB3260: Ecological Dynamics: An Introduction to Modelling (Level 3; TSV)
- MB5070: Marine Evolution and Biogeography (Level 5; TSV)
- MB5190: Coral Reef Ecology (Level 5; TSV)
- MB5260: Ecological Dynamics: An Introduction to Modelling (Level 5; TSV)
- SC1102: Modelling Natural Systems (Level 1; TSV)
- Theoretical and statistical modelling in ecology.
- Coral Reef Ecology
- Population and Community Ecology
- Physiological Ecology
- Development and application of innovative approaches to teaching the skills of model formulation and analysis to undergraduates, especially in biology.
- Statistical modelling in ecology for postgraduate students, with a focus on methods that allow confronting bespoke ecological models with empirical data.
- 2016 to present - Professor, Personal Chair, James Cook University
- 2010 to 2016 - Professorial Research Fellow, James Cook University
- 2008 to 2012 - Australian Professorial Fellow, ARC Centre of Excellence for Coral Reef Studies
- 2007 to 2009 - Associate Professor, James Cook University
- 2003 to 2006 - Senior Lecturer, James Cook University
- 2000 to 2002 - Lecturer, James Cook University
- 1998 to 2000 - Postdoctoral Research Associate, University of Arizona
Sean Connolly is a Program Leader of Dynamics of Coral Reef Ecosystems in the ARC Centre of Excellence for Coral Reef Studies. Sean combines mathematical and statistical modelling with fieldwork and laboratory experiments to study the dynamics of biological turnover at all scales, including ecophysiology, population dynamics, species interactions and biodiversity, and macroevolution.
He received his doctorate in 1999 from Stanford University in California, USA, for research on the ecology of rocky shores. In 1999-2000, he was a postdoctoral research fellow at the University of Arizona, USA, where he examined global dynamics of marine biodiversity in the fossil record. In 2000, Sean came to JCU to develop and lead a research and research training program in ecological modelling applied to coral reefs. Sean has >100 publications in leading international journals, including 5 papers in Science or Nature, and he has supervised 38 Postgraduate and Honours students since 2001.
Recent awards include the Fenner Medal of the Australian Academy of Science (2009), which honours outstanding research in the biological sciences by a scientist under 40.
- 2014 - Citation for Outstanding Contributions to Student Learning (Office of Learning and Teaching, Australia)
- 2009 - Fenner Medal (Australian Academy of Science)
- 2006 - Carrick Citation for Outstanding Contributions to Student Learning (Carrick Institute, Australia)
- 2005 - Dean's Excellence in Research Award for Early Career Research (James Cook University)
- 2008 to 2012 - Australian Professorial Fellowship (Australian Research Council)
- 1998 to 2000 - Postdoctoral Fellowship (Research Training Group in the Analysis of Biological Diversification, University of Arizona)
- 1994 to 1998 - Pre-doctoral Fellowship (National Science Foundation, USA)
These are the most recent publications associated with this author. To see a detailed profile of all publications stored at JCU, visit ResearchOnline@JCU. Hover over Altmetrics badges to see social impact.
- Journal Articles
- Casey J, Baird A, Brandl S, Hoogenboom M, Rizzari J, Frisch A, Mirbach C and Connolly S (2017) A test of trophic cascade theory: fish and benthic assembalges across a predator density gradient on coral reefs. Oecologia, 183 (1). pp. 161-175
- Álvarez-Noriega M, Baird A, Dornelas M, Madin J, Cumbo V and Connolly S (2016) Fecundity and the demographic strategies of coral morphologies. Ecology, 97 (12). pp. 3485-3493
- Chan N, Wangpraseurt D, Kuhl M and Connolly S (2016) Flow and coral morphology control coral surface pH: implications for the effects of ocean acidification. Frontiers in Marine Science, 26. pp. 637-641
- Hopf J, Jones G, Williamson D and Connolly S (2016) Fishery consequences of marine reserves: short-term pain for longer-term gain. Ecological Applications, 26 (3). pp. 818-829
- Hopf J, Jones G, Williamson D and Connolly S (2016) Synergistic effects of marine reserves and harvest controls on the abundance and catch dynamics of a coral reef fishery. Current Biology, 26 (12). pp. 1543-1548
- Madin J, Hoogenboom M, Connolly S, Darling E, Falster D, Huang D, Keith S, Mizerek T, Pandolfi J, Putnam H and Baird A (2016) A trait-based approach to advance coral reef science. Trends in Ecology & Evolution, 31 (6). pp. 419-428
- Malerba M, Heimann K and Connolly S (2016) Nutrient utilization traits vary systematically with intraspecific cell size plasticity. Functional Ecology, 30 (11). pp. 1745-1755
- Malerba M, Heimann K and Connolly S (2016) Improving dynamic phytoplankton reserve-utilization models with an indirect proxy for internal nitrogen. Journal of Theoretical Biology, 404. pp. 1-9
- Malerba M, Connolly S and Heimann K (2016) Standard flow cytometry as a rapid and non-destructive proxy for cell nitrogen quota. Journal of Applied Phycology, 28 (2). pp. 1085-1095
- Casey J, Connolly S and Ainsworth T (2015) Coral transplantation triggers shift in microbiome and promotion of coral disease associated potential pathogens. Scientific Reports, 5. pp. 1-11
- Casey J, Choat J and Connolly S (2015) Coupled dynamics of territorial damselfishes and juvenile corals on the reef crest. Coral Reefs, 34. pp. 1-11
- Freilich M and Connolly S (2015) Phylogenetic community structure when competition and environmental filtering determine abundances. Global Ecology and Biogeography , 24 (12). pp. 1390-1400
ResearchOnline@JCU stores 89+ research outputs authored by Prof Sean Connolly from 2001 onwards.
- Current Funding
Current and recent Research Funding to JCU is shown by funding source and project.
Australian Research Council - Centres of Excellence
ARC Centre of Excellence for Integrated Coral Reef Studies
- Indicative Funding
- $28,000,000 over 7 years
- The overarching aim of the ARC Centre of Excellence for Integrated Coral Reef Studies is to provide the scientific knowledge necessary for sustaining ecosystem goods and services of the world's coral reefs, which support the livelihoods and food security of millions of people in the tropics. The Centre will enhance Australia's global leadership in coral reef science through three ambitious research programs addressing the future of coral reefs and their ability to adapt to change. A key outcome of the research will be providing tangible benefits to all Australians by bui8lding bridges between the natural and social sciences, strengthening capacity, and informing and supporting transformative changes in coral reef governance and management.
- Terry Hughes, Ove Hoegh-Guldberg, Malcolm McCulloch, Peter Mumby, Sean Connolly, John Pandolfi, Bob Pressey, Bette Willis, Andrew Baird, David Bellwood, Joshua Cinner, Sophie Dove, Sylvain Foret, Nick Graham, Mia Hoogenboom, Geoff Jones, Mike Kingsford, Ryan Lowe, Mark McCormick, David Miller, Philip Munday, Morgan Pratchett and Garry Russ in collaboration with Neil Andrew, Jeremy Jackson, Janice Lough, Laurence McCook, Stephen Palumbi, Serge Planes and Madeleine van Oppen (ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, The University of Western Australia, College of Science & Engineering, Australian National University, College of Public Health, Medical & Vet Sciences, WorldFish, International Union for Conservation of Nature, Australian Institute of Marine Science, Great Barrier Reef Marine Park Authority, Stanford University and Centre National de la Recherche Scientifique)
- coral reef ecosystems; Climate Change Adaptation; ecological resilience; biodiversity goods and services; social-ecological dynamics
Advisory Accreditation: I can be on your Advisory Panel as a Primary or Secondary Advisor.
These Higher Degree Research projects are either current or by students who have completed their studies within the past 5 years at JCU. Linked titles show theses available within ResearchOnline@JCU.
- Biogeographic Analysis to Guide Better Marine Management: A Case Study of the Great Barrier Reef (PhD, Secondary Advisor)
- Community Assembly and Diversity-Stability Relationship in Coral Reef Fishes (PhD, Primary Advisor)
- Coexistence-promoting mechanisms in reef-coral communities (PhD, Primary Advisor)
- Feeding ecology of corallivorous reef fishes (PhD, Secondary Advisor)
- The effect of spatial and temporal fluctuations in temperature on the thermal performance of scleractinian corals (PhD, Secondary Advisor)
- Primary Habitat Requirements of Key Herbivorous Fish and Stress-Tolerant Coral Species in the Great Barrier Reef: Which Ecological Factors Govern their Distribution and How to Draw Lessons for Coral Reef. (PhD, Secondary Advisor)
- Effect of ocean acidification on reef-building corals: understanding variability and projecting population-level impact (2015, PhD, Primary Advisor)
- The Dietary Niche in Behavioural and Community Ecology (2015, PhD, Primary Advisor)
- Population regulation and diversity-stability relationships in ecological time-series (2015, PhD, Primary Advisor)
- The spatial ecology of coral reef fishes (2014, PhD, Secondary Advisor)
- Multiple stressor effects on coral reefs (2014, PhD, Associate Advisor)
- Modelling physical and biological drivers of larval retention in reef systems (2013, PhD, Primary Advisor)
- The trophic and spatial ecology of rabbitfishes (Perciformes, Siganidae) on coral reefs (2012, PhD, Secondary Advisor)
- The role of territorial grazers in coral reef trophic dynamics from microbes to apex predators (2015, PhD, Primary Advisor)
- Crustacea on coral reefs: habitat associations and trophic relationships (2016, PhD, Associate Advisor)
- The energetics of scleractinian coral larvae and implications for dispersal (2012, PhD, Associate Advisor)
- Extending quota models to nitrogen-limited growth of phytoplankton populations (2016, PhD, Primary Advisor)
- Functional niche partitioning in herbivorous coral reef fishes (2016, PhD, Secondary Advisor)
- The Role of Tabular Structure in the Ecology of Large Reef Fishes (2016, PhD, Secondary Advisor)
- The short- & long-term implications of marine reserves for fisheries on coral reefs (2016, PhD, Primary Advisor)
These are the most recent metadata records associated with this researcher. To see a detailed description of all dataset records, visit the JCU Research Data Catalogue.
- Malerba, M. (2016) Nitrate-ammonium utilisation for the green alga species Desmodesmus armatus reared in laboratory batch culture conditions. . James Cook University
The map shows research collaborations by institution from the past 7 years.
Note: Map points are indicative of the countries or states that institutions are associated with.
- 5+ collaborations
- 4 collaborations
- 3 collaborations
- 2 collaborations
- 1 collaboration
- Indicates the Tropics (Torrid Zone)