Research Data

Data for PhD thesis Chapter 4: Cleaner shrimp clean farmed fish

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General
Title
Data for PhD thesis Chapter 4: Cleaner shrimp clean farmed fish
Type
Dataset
Date Record Created
2018-05-16
Date Record Modified
2018-06-28
Language
English
Coverage
Date Coverage
2018
Time Period
(no information)
Geospatial Location
  • Marine Parasitology Laboratory, Centre for Sustainable Tropical Fisheries and Aquaculture, James Cook University, Townsville, Queensland, Australia
Description
Descriptions
  1. Type: full

    Datasets (all) in .csv format for direct import into R. The data collection consists of the following datasets:

    Cocoons.csv

    This dataset contains the data used for the analysis of shrimp consumption of leech cocoons only, using a generalise linear models. 

    Cryptocaryon.csv

    This dataset contains the data used for all analyses of trophonts on fish. It is the parent dataset.

    Cryptocaryon2.csv

    This is the same dataset as Cryptocaryon.csv but with an additional “line” category used to subset the data into the individual shrimp species for pairwise comparisons using ‘treatment’ as the explanatory variable. Each of these was run as separate generalised linear models with a quasibinomial regression and “logit” link, analysed with Anova() in the ‘car’ package in R:

    Cryptonfish1.csv = Lysmata amboinensis specific trophont data subset.

    Cryptonfish2.csv = Lysmata vittata specific trophont data subset.

    Cryptonfish3.csv = Stenopus hispidus specific trophont data subset.

    Cryptonfish4.csv = Urocaridella antonbruunii specific trophont data subset.

     

    Tomonts.LA.csv = Lysmata amboinensis specific tomont data subset.

    Tomonts.LV.csv = Lysmata vittata specific tomont data subset.

    Tomonts.SH.csv = Stenopus hispidus specific tomont data subset.

    Tomonts.LA.csv = Urocaridella antonbruunii specific tomont data subset.

    Neo.csv

    This is the Neobenedenia data for on-fish initial models. It is the parent dataset.

    Neo2.csv

    This is the same dataset as Neo.csv but with an additional “line” category used to subset the data into the individual shrimp species for pairwise comparisons using ‘treatment’ as the explanatory variable. Each of these was run as separate generalised linear models with a quasibinomial regression and “logit” link, analysed with Anova() in the ‘car’ package in R:

    Onfish1.csv = Lysmata amboinensis specific Neobenedenia girellae on-fish data subset.

    Onfish2.csv = Lysmata vittata specific Neobenedenia girellae on-fish data subset.

    Onfish3.csv = Stenopus hispidus specific Neobenedenia girellae on-fish data subset.

    Onfish4.csv = Urocaridella antobruunii specific Neobenedenia girellae on-fish data subset.

    Neo.eggs.csv

    This is the Neobenedenia eggs parent data for all Neo eggs analyses.

    Neo.eggs2.csv

    This is the same dataset as Neo.eggs.csv but with an additional “line” category used to subset the data into the individual shrimp species for pairwise comparisons using ‘treatment’ as the explanatory variable. Each of these was run as separate generalised linear models with a quasibinomial regression and “logit” link, analysed with Anova() in the ‘car’ package in R:

    Eggs.LA.csv = Lysmata amboinensis specific Neobenedenia eggs data.

    Eggs.LV.csv = Lysmata vittata specific Neobenedenia eggs dataa.

    Eggs.SH.csv = Stenopus hispidus specific Neobenedenia eggs data.

    Eggs.UA.csv = Urocaridella antonbruunii specific Neobenedenia eggs data.

    Leech.csv

    This dataset contains the data used for all analyses of leeches on fish. It is the parent dataset.

    Leech2.csv

    This is the same dataset as Leech.csv but with an additional “line” category used to subset the data into the individual shrimp species for pairwise comparisons using ‘treatment’ as the explanatory variable. Each of these was run as separate generalised linear models with a quasibinomial regression and “logit” link, analysed with Anova() in the ‘car’ package in R:

    Leech3.csv = Lysmata amboinensis NIGHT ONLY specific data subset.

    Leeches.LA = Lysmata amboinensis specific leeches on fish data subset.

    Leeches.LV = Lysmata vittata specific leeches on fish data subset.

    Leeches.SH = Stenopus hispidus specific leeches on fish data subset.

    Leeches_plot_frame.csv = data frame used for leech plots.

    Histo.csv

    This is the data used for Appendix 5 of the PhD thesis.

          

     

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Related Websites
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Related Data
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Technical metadata
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People
Creators
  1. Owned by: Mr David Vaughan , david.vaughan@my.jcu.edu.au , College of Science & Engineering
Primary Contact
Mr David Vaughan, david.vaughan@my.jcu.edu.au
Supervisors
  1. Dr Kate Hutson , kate.hutson@jcu.edu.au
Collaborators
  1. Dr Alexandra Grutter, University of Queensland
  2. Dr Kate Hutson, James Cook University, kate.hutson@jcu.edu.au
Subject
Fields of Research
  1. 060801 - Animal Behaviour (060801)
Socio-Economic Objective
  1. 970106 - Expanding Knowledge in the Biological Sciences (970106)
Keywords
  1. cleaning symbiosis
  2. cleaner shrimp
  3. fish ectoparasites
Research Activity
(no information)
Research Themes
Tropical Ecosystems, Conservation and Climate Change
Rights
License
CC BY 4.0: Attribution 4.0 International
License - Other
(no information)
Access Rights/Conditions
Open access. If the data is not freely accessible via the link provided, please contact the nominated data manager or researchdata@jcu.edu.au for assistance.
Type
open
Rights
(no information)
Data
Data Location
Online Locations
Attachments
  1. Tomonts.SH.csv (Storage Attachments, Public)
  2. Eggs.UA.csv (Storage Attachments, Public)
  3. Cryptonfish3.csv (Storage Attachments, Public)
  4. Cryptonfish4.csv (Storage Attachments, Public)
  5. Leech3.csv (Storage Attachments, Public)
  6. Eggs.SH.csv (Storage Attachments, Public)
  7. Eggs.LA.csv (Storage Attachments, Public)
  8. Tomonts.UA.csv (Storage Attachments, Public)
  9. Cocoons.csv (Storage Attachments, Public)
  10. Onfish1.csv (Storage Attachments, Public)
  11. Neo2.csv (Storage Attachments, Public)
  12. Eggs.LV.csv (Storage Attachments, Public)
  13. Neo.csv (Storage Attachments, Public)
  14. Neo.eggs2.csv (Storage Attachments, Public)
  15. Histo.csv (Storage Attachments, Public)
  16. Cryptonfish1.csv (Storage Attachments, Public)
  17. Neo.eggs.csv (Storage Attachments, Public)
  18. Leech.csv (Storage Attachments, Public)
  19. Onfish2.csv (Storage Attachments, Public)
  20. Cryptocaryon.csv (Storage Attachments, Public)
  21. Tomonts.LA.csv (Storage Attachments, Public)
  22. Leeches.LA.csv (Storage Attachments, Public)
  23. Cryptocaryon2.csv (Storage Attachments, Public)
  24. Tomonts.LV.csv (Storage Attachments, Public)
  25. Onfish3.csv (Storage Attachments, Public)
  26. Leeches.SH.csv (Storage Attachments, Public)
  27. Leeches.LV.csv (Storage Attachments, Public)
  28. Onfish4.csv (Storage Attachments, Public)
  29. Leech2.csv (Storage Attachments, Public)
  30. Cryptonfish2.csv (Storage Attachments, Public)
  31. Leeches_plot_frame.csv (Storage Attachments, Public)
Stored At
(no information)
Citation
Cite:
Vaughan, D. (2018). Data for PhD thesis Chapter 4: Cleaner shrimp clean farmed fish. James Cook University. (dataset). http://dx.doi.org/10.4225/28/5b343a73f35f7
Digital Object Identifier (DOI):
10.4225/28/5b343a73f35f7