- BC2023: Molecular Genetics (Level 2; TSV)
- BC3101: Genes, Genomes and Development (Level 3; TSV)
- BC3202: Special Topics in Biochemistry and Molecular Biology (Level 3; TSV)
- BC5101: Genes, Genomes and Development (Level 5; TSV)
- BC5202: Special Topics in Biochemistry and Molecular Biology (Level 5; TSV)
- BC5312: Research and Dissertation in Biochemistry (Level 5; TSV)
- GG3101: Advanced Genetics and Genomics (Level 3; TSV)
- GG3202: Special Topics in Genetics (Level 3; TSV)
These are the most recent publications associated with this author. To see a detailed profile of all publications stored at JCU, visit ResearchOnline@JCU. Hover over Altmetrics badges to see social impact.
- Journal Articles
- Mohamed A, Cumbo V, Harii S, Shinzato C, Chan C, Ragan M, Bourne D, Willis B, Ball E, Satoh N and Miller D (2016) The transcriptomic response of the coral Acropora digitifera to a competent Symbiodinium strain: the symbiosome as an arrested early phagosome. Molecular Ecology, 25 (13). pp. 3127-3141
- Moya A, Howes E, Lacoue-Labarthe T, Forêt S, Hanna B, Medina M, Munday P, Ong J, Teyssié J, Torda G, Watson S, Miller D, Bijma J and Gattuso J (in press) Near-future pH conditions severely impact calcification, metabolism and the nervous system in the pteropod Heliconoides inflatus. Global Change Biology, pp. 1-13
- Moya A, Sakamaki K, Mason B, Huisman L, Forêt S, Weiss Y, Bull T, Tomii K, Imai K, Hayward D, Ball E and Miller D (2016) Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora. BMC Genomics, 17. pp. 1-20
- Bertucci A, Forêt S, Ball E and Miller D (2015) Transcriptomic differences between day and night in Acropora millepora provide new insights into metabolite exchange and light-enhanced calcification in corals. Molecular Ecology, 24 (17). pp. 4489-4504
- Hayward D, Grasso L, Saint R, Miller D and Ball E (2015) The organizer in evolution–gastrulation and organizer gene expression highlight the importance of Brachyury during development of the coral, Acropora millepora. Developmental Biology, 399 (2). pp. 337-347
- Lutz A, Raina J, Motti C, Miller D and van Oppen M (2015) Host coenzyme Q redox state is an early biomarker of thermal stress in the coral Acropora millepora. PLoS ONE, 10 (10). pp. 1-18
- Moya A, Huisman L, Fêret S, Gattuso J, Hayward D, Ball E and Miller D (2015) Rapid acclimation of juvenile corals to CO2-mediated acidification by upregulation of heat shock protein and Bcl-2 genes. Molecular Ecology, 24 (2). pp. 438-452
- Sakamaki K, Imai K, Tomii K and Miller D (2015) Evolutionary analyses of caspase-8 and its paralogs: deep origins of the apoptotic signaling pathways. BioEssays, 37 (7). pp. 767-776
- Bosch T, Adamska M, Augustin R, Domazet-Loso T, Foret S, Fraune S, Funayama N, Grasis J, Hamada M, Hatta M, Hobmayer B, Kawai K, Klimovich A, Manuel M, Shinzato C, Technau U, Yum S and Miller D (2014) How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans. BioEssays, 36 (12). pp. 1185-1194
- Kitahara M, Lin M, Forêt S, Huttley G, Miller D and Chen C (2014) The "naked coral" hypothesis revisited: evidence for and against Scleractinian monophyly. PLoS One, 9 (4). pp. 1-13
- Lin M, Kitahara M, Luo H, Tracey D, Geller J, Fukami H, Miller D and Chen C (2014) Mitochondrial genome rearrangements in the Scleractinia/Corallimorpharia complex: implications for coral phylogeny. Genome Biology and Evolution, 6 (5). pp. 1086-1095
- Lutz A, Motti C, Freckelton M, Van Oppen M, Miller D and Dunlap W (2014) Simultaneous determination of coenzyme Q and plastoquinone redox states in the coral-Symbiodinium symbiosis during thermally induced bleaching. Journal of Experimental Marine Biology and Ecology, 455. pp. 1-6
ResearchOnline@JCU stores 107+ research outputs authored by Prof David Miller from 1993 onwards.
- Current Funding
Current and recent Research Funding to JCU is shown by funding source and project.
Australian Research Council - Centres of Excellence
ARC Centre of Excellence for Integrated Coral Reef Studies
- Indicative Funding
- $28,000,000 over 7 years
- The overarching aim of the ARC Centre of Excellence for Integrated Coral Reef Studies is to provide the scientific knowledge necessary for sustaining ecosystem goods and services of the world's coral reefs, which support the livelihoods and food security of millions of people in the tropics. The Centre will enhance Australia's global leadership in coral reef science through three ambitious research programs addressing the future of coral reefs and their ability to adapt to change. A key outcome of the research will be providing tangible benefits to all Australians by bui8lding bridges between the natural and social sciences, strengthening capacity, and informing and supporting transformative changes in coral reef governance and management.
- Terry Hughes, Ove Hoegh-Guldberg, Malcolm McCulloch, Peter Mumby, Sean Connolly, John Pandolfi, Bob Pressey, Bette Willis, Andrew Baird, David Bellwood, Joshua Cinner, Sophie Dove, Sylvain Foret, Nick Graham, Mia Hoogenboom, Geoff Jones, Mike Kingsford, Ryan Lowe, Mark McCormick, David Miller, Philip Munday, Morgan Pratchett and Garry Russ in collaboration with Neil Andrew, Jeremy Jackson, Janice Lough, Laurence McCook, Stephen Palumbi, Serge Planes and Madeleine van Oppen (ARC Centre of Excellence for Coral Reef Studies, The University of Queensland, The University of Western Australia, College of Science & Engineering, Australian National University, College of Public Health, Medical & Vet Sciences, Worldfish Centre - Penang, International Union for Conservation of Nature, Australian Institute of Marine Science, Great Barrier Reef Marine Park Authority, Stanford University and Centre National de la Recherche Scientifique)
- coral reef ecosystems; Climate Change Adaptation; ecological resilience; biodiversity goods and services; social-ecological dynamics
Queensland Government - Accelerate Partnerships
Coral genomes along environmental gradients
- Indicative Funding
- $140,000 over 2 years (administered by University of Queensland)
- The project will examine variation in the genomes of coral holobionts along two environmental gradients on the Great Barrier Reef, the first being dominated by sediments, nutrients and heavy metals, and the second by variation in surface water temperature. The aim is to identify markers appropriate for genetic connectivity, health status, stress and resilience in response to thermal or water quality parameters, and begin to integrate these data into management decisions.
- Mark Ragan, Eva Abal, Roger Beeden, David Bourne, Sylvain Foret, Andrew Gilbert, Ove Hoegh-Guldberg, David Miller, Bill Leggat, Gene Tyson and Madeleine van Oppen in collaboration with Kyall Zenger (The University of Queensland, Great Barrier Reef Marine Park Authority, Australian Institute of Marine Science, Australian National University, Bioplatforms Australia, College of Public Health, Medical & Vet Sciences and College of Science & Engineering)
- rocal resilience; environmental genomics; Pollution; reef management; coral adaptation
Australian Research Council - Linkage - Infrastructure (L-IEF)
High-throughput DNA sequencing facility at James Cook University
- Indicative Funding
- Many JCU projects underpinned by high-throughput DNA sequencing technologies require immediate direct local access for efficiency and quality assurance. Currently due to the tyranny of distance accessing high-throughput sequencing significantly increases turnaround time and can place valuable and unrecoverable samples to problems associated with reliable freighting and transport of material from infectious disease agents. Therefore it is essential that a high-throughput sequencing facility is established in northern Australia that can service the region and that allows rapid turnaround times, flexibility in services available including customisation, the ability to run pilot projects on small scales and alleviates biosecurity concerns.
- David Miller, Dean Jerry, Alex Loukas, Gregory Maes and Cinzia Cantacessi (College of Public Health, Medical & Vet Sciences, College of Science & Engineering and Australian Institute of Tropical Health & Medicine)
- Genotyping; metagenomics; Transcriptomics
Advisory Accreditation: I can be on your Advisory Panel as a Primary or Secondary Advisor.
These Higher Degree Research projects are either current or by students who have completed their studies within the past 5 years at JCU. Linked titles show theses available within ResearchOnline@JCU.
- Studying Stress Impacts Using the Mushroom Coral Heliofungia (PhD, Primary Advisor)
- Coral Mediation of Associated Microbial Community (PhD, Primary Advisor)
- Tracking Dimethylsulfoniopropionate (DMSP) Catabolism in Corals and Their Role in Local Climate. (PhD, Primary Advisor)
- Immunity and Secondary Metabolite Production in the Soft Coral Lobophytum Pauciflorum in Competition and the Effects of Ocean Acidification on These Proceses. (PhD, Primary Advisor)
- Coenzyme Q and plastoquinone pool redox states in the coral-Symbiodinium symbiosis (2013, PhD, Primary Advisor)
- Transcriptomics of Coral-algal Interactions: Novel Insights Into the Establishment of Symbiosis (2016, PhD, Primary Advisor)
- Corallimorpharian Transcriptomes and their use to Understand Phylogeny and Symbiosis in the Hexacorallia;; (2016, PhD, Primary Advisor)
- Transcriptomic Analyses of the Responses of Corals to Environmental Stress (2016, PhD, Primary Advisor)
- Characterization of the Wnt signalling system in the coral Acropora millepora (2012, PhD, Primary Advisor)
- Molecular Bases of Soft Coral Reproduction (2016, PhD, Primary Advisor)
These are the most recent metadata records associated with this researcher. To see a detailed description of all dataset records, visit the JCU Research Data Catalogue.
- Wessels, W. (2016) Microbiome of the soft coral Lobophytum pauciflorum. James Cook University
- Wessels, W. (2016) A comparative study on sexual reproduction of scleractinian and alcyonacean corals. James Cook University
The map shows research collaborations by institution from the past 7 years.
Note: Map points are indicative of the countries or states that institutions are associated with.
- 5+ collaborations
- 4 collaborations
- 3 collaborations
- 2 collaborations
- 1 collaboration
- Indicates the Tropics (Torrid Zone)
Connect with me
My research areas
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Dr Vimoksalehi LukoschekARC Centre of Excellence for Coral Reef Studies